Sequence Similarity Clusters for the Entities in PDB 1H2U

Entity #1 | Chains: A,B
80 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 723 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25078
95 % 2 2 21376 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 2 20777
70 % 2 2 19080
50 % 2 2 16587
40 % 2 2 14814
30 % 2 2 12712
Entity #2 | Chains: X,Y
20 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 2562
95 % 5 9 3204 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.9
PDBFlex
90 % 5 9 3249
70 % 5 9 3209
50 % 5 9 3131
40 % 5 9 3050
30 % 5 9 2860

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.