Sequence Similarity Clusters for the Entities in PDB 1H2U

Entity #1 | Chains: A,B
80 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 723 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24372
95 % 2 2 20767 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 20188
70 % 2 2 18595
50 % 2 2 16190
40 % 2 2 14470
30 % 2 2 12415
Entity #2 | Chains: X,Y
20 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 9211
95 % 5 7 9373 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.9
PDBFlex
90 % 5 7 9273
70 % 5 7 8843
50 % 5 7 7993
40 % 5 7 7338
30 % 5 7 6479

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.