Sequence Similarity Clusters for the Entities in PDB 1H2U

Entity #1 | Chains: A,B
80 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 723 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24816
95 % 2 2 21173 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 2 20576
70 % 2 2 18896
50 % 2 2 16438
40 % 2 2 14684
30 % 2 2 12599
Entity #2 | Chains: X,Y
20 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 9326
95 % 5 7 9501 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.9
PDBFlex
90 % 5 7 9399
70 % 5 7 8993
50 % 5 7 8119
40 % 5 7 7447
30 % 5 7 6576

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.