Sequence Similarity Clusters for the Entities in PDB 1H2U

Entity #1 | Chains: A,B
80 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 723 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25987
95 % 2 2 22088 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 2 21436
70 % 2 2 19663
50 % 2 2 17072
40 % 2 2 15230
30 % 2 2 13068
Entity #2 | Chains: X,Y
20 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 2656
95 % 5 9 3322 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.9
PDBFlex
90 % 5 9 3367
70 % 5 9 3321
50 % 5 9 3237
40 % 5 9 3146
30 % 5 9 2949

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures