Sequence Similarity Clusters for the Entities in PDB 1H2T

Entity #1 | Chains: C
80 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 723 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27268
95 % 5 11 2709 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 5 11 2691
70 % 5 11 2667
50 % 5 11 2643
40 % 5 11 2583
30 % 5 11 2418
Entity #2 | Chains: Z
20 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 2917
95 % 4 9 3236 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.6
PDBFlex
90 % 4 9 3294
70 % 4 9 3243
50 % 4 9 3179
40 % 4 9 3087
30 % 4 9 2841

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures