Sequence Similarity Clusters for the Entities in PDB 1H2T

Entity #1 | Chains: C
80 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 723 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25948
95 % 1 2 22060 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 2 21409
70 % 1 2 19642
50 % 1 2 17056
40 % 1 2 15214
30 % 1 2 13057
Entity #2 | Chains: Z
20 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 2655
95 % 4 9 3319 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.9
PDBFlex
90 % 4 9 3364
70 % 4 9 3318
50 % 4 9 3232
40 % 4 9 3143
30 % 4 9 2946

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures