Sequence Similarity Clusters for the Entities in PDB 1H2S

Entity #1 | Chains: A
SENSORY RHODOPSIN II protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 4319
95 % 4 15 4108 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 15 4138
70 % 4 15 4078
50 % 4 15 3940
40 % 4 15 3765
30 % 74 194 174
Entity #2 | Chains: B
SENSORY RHODOPSIN II TRANSDUCER protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72748
95 % 1 1 50529
90 % 1 1 47955
70 % 1 1 42062
50 % 1 1 35869
40 % 1 1 31576
30 % 1 1 26659

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.