Sequence Similarity Clusters for the Entities in PDB 1H2S

Entity #1 | Chains: A
SENSORY RHODOPSIN II protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 4514
95 % 4 15 4267 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 15 4304
70 % 4 15 4229
50 % 4 15 4075
40 % 4 15 3887
30 % 74 194 180
Entity #2 | Chains: B
SENSORY RHODOPSIN II TRANSDUCER protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74995
95 % 1 1 51983
90 % 1 1 49267
70 % 1 1 43165
50 % 1 1 36781
40 % 1 1 32367
30 % 1 1 27316

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures