Sequence Similarity Clusters for the Entities in PDB 1H2S

Entity #1 | Chains: A
SENSORY RHODOPSIN II protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 4399
95 % 4 15 4164 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 15 4194
70 % 4 15 4130
50 % 4 15 3985
40 % 4 15 3809
30 % 74 194 175
Entity #2 | Chains: B
SENSORY RHODOPSIN II TRANSDUCER protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73694
95 % 1 1 51137
90 % 1 1 48501
70 % 1 1 42516
50 % 1 1 36250
40 % 1 1 31900
30 % 1 1 26933

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures