Sequence Similarity Clusters for the Entities in PDB 1H2R

Entity #1 | Chains: S
PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT) protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 17 3032
95 % 17 17 3753 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 17 17 3810
70 % 17 18 3324
50 % 24 47 501
40 % 28 59 460
30 % 28 59 459
Entity #2 | Chains: L
PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT) protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31598
95 % 17 18 3407 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 17 18 3462
70 % 17 18 3427
50 % 21 42 580
40 % 36 65 415
30 % 45 83 332

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures