Sequence Similarity Clusters for the Entities in PDB 1H2R

Entity #1 | Chains: S
PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT) protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 17 3131
95 % 17 17 3870 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 17 17 3933
70 % 17 18 3433
50 % 24 47 515
40 % 30 62 456
30 % 30 62 453
Entity #2 | Chains: L
PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT) protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32516
95 % 17 18 3513 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 17 18 3580
70 % 17 18 3541
50 % 21 42 592
40 % 41 71 405
30 % 50 89 319

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures