Sequence Similarity Clusters for the Entities in PDB 1H2R

Entity #1 | Chains: S
PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT) protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 17 3099
95 % 17 17 3827 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 17 17 3882
70 % 17 18 3395
50 % 24 47 511
40 % 28 59 468
30 % 28 59 462
Entity #2 | Chains: L
PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT) protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32128
95 % 17 18 3478 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 17 18 3535
70 % 17 18 3499
50 % 21 42 587
40 % 39 68 420
30 % 48 86 331

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures