Sequence Similarity Clusters for the Entities in PDB 1H2M

Entity #1 | Chains: A
FACTOR INHIBITING HIF1 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 31 1372
95 % 23 38 1433 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 23 38 1460
70 % 23 38 1463
50 % 23 38 1518
40 % 23 38 1530
30 % 23 38 1502
Entity #2 | Chains: S
HYPOXIA-INDUCIBLE FACTOR 1 ALPHA protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 49902
95 % 1 2 37239
90 % 1 2 35535
70 % 1 2 31570
50 % 1 2 26972
40 % 1 2 23814
30 % 1 2 20211

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures