Sequence Similarity Clusters for the Entities in PDB 1H2M

Entity #1 | Chains: A
FACTOR INHIBITING HIF1 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 37 1271
95 % 23 38 1478 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 23 38 1503
70 % 23 38 1514
50 % 23 38 1567
40 % 23 38 1563
30 % 23 38 1547
Entity #2 | Chains: S
HYPOXIA-INDUCIBLE FACTOR 1 ALPHA protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39180
95 % 1 2 33107
90 % 1 2 31689
70 % 1 2 28327
50 % 1 2 24232
40 % 1 2 21323
30 % 1 2 17792

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures