Sequence Similarity Clusters for the Entities in PDB 1H2K

Entity #1 | Chains: A
FACTOR INHIBITING HIF1 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 37 1402
95 % 2 38 1622 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 38 1647
70 % 2 38 1666
50 % 2 38 1687
40 % 2 38 1685
30 % 2 38 1646
Entity #2 | Chains: S
HYPOXIA-INDUCIBLE FACTOR 1 ALPHA protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 22660
95 % 1 4 20405 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 4 19816
70 % 1 4 18146
50 % 1 4 15788
40 % 1 4 14027
30 % 1 4 11795

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1H2K 2 S HYPOXIA-INDUCIBLE FACTOR 1 ALPHA C-TERMINAL TRANSACTIVATION DOMAIN FRAGMENT, RESIDUES 786-826 9606
2 1H2L 2 S HYPOXIA-INDUCIBLE FACTOR 1 ALPHA C-TERMINAL TRANSACTIVATION DOMAIN FRAGMENT, RESIDUES 786-826 9606
3 2ILM 2 S Hypoxia-inducible factor 1 alpha CTAD 9606
4 1L3E 1 A hypoxia inducible factor-1 alpha subunit C-terminal transactivation domain (CTAD) 9606