Sequence Similarity Clusters for the Entities in PDB 1H2K

Entity #1 | Chains: A
FACTOR INHIBITING HIF1 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 37 1398
95 % 2 38 1618 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 38 1644
70 % 2 38 1661
50 % 2 38 1684
40 % 2 38 1681
30 % 2 38 1649
Entity #2 | Chains: S
HYPOXIA-INDUCIBLE FACTOR 1 ALPHA protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 22619
95 % 1 4 20370 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 4 19786
70 % 1 4 18119
50 % 1 4 15767
40 % 1 4 14009
30 % 1 4 11787

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1H2K 2 S HYPOXIA-INDUCIBLE FACTOR 1 ALPHA C-TERMINAL TRANSACTIVATION DOMAIN FRAGMENT, RESIDUES 786-826 9606
2 1H2L 2 S HYPOXIA-INDUCIBLE FACTOR 1 ALPHA C-TERMINAL TRANSACTIVATION DOMAIN FRAGMENT, RESIDUES 786-826 9606
3 2ILM 2 S Hypoxia-inducible factor 1 alpha CTAD 9606
4 1L3E 1 A hypoxia inducible factor-1 alpha subunit C-terminal transactivation domain (CTAD) 9606