Sequence Similarity Clusters for the Entities in PDB 1H2D

Entity #1 | Chains: A,B
MATRIX PROTEIN VP40 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40978
95 % 1 1 31061 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 1 29748
70 % 1 1 26658
50 % 1 1 22800
40 % 1 1 20053
30 % 1 1 16974
Entity #2 | Chains: R,S
5'-R(*UP*GP*AP)-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.