Sequence Similarity Clusters for the Entities in PDB 1H2D

Entity #1 | Chains: A,B
MATRIX PROTEIN VP40 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44018
95 % 1 1 33283 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 1 31800
70 % 1 1 28355
50 % 1 1 24162
40 % 1 1 21250
30 % 1 1 17988
Entity #2 | Chains: R,S
5'-R(*UP*GP*AP)-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures