Sequence Similarity Clusters for the Entities in PDB 1H2C

Entity #1 | Chains: A
MATRIX PROTEIN VP40 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63427
95 % 1 1 43697
90 % 1 1 41516
70 % 1 1 36576
50 % 1 1 31215
40 % 1 1 27573
30 % 1 1 23368
Entity #2 | Chains: R
5'-R(*UP*GP*AP)-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.