Sequence Similarity Clusters for the Entities in PDB 1H2C

Entity #1 | Chains: A
MATRIX PROTEIN VP40 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61355
95 % 1 1 49963
90 % 1 1 47411
70 % 1 1 41560
50 % 1 1 35267
40 % 1 1 30905
30 % 1 1 25833
Entity #2 | Chains: R
5'-R(*UP*GP*AP)-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures