Sequence Similarity Clusters for the Entities in PDB 1H28

Entity #1 | Chains: A,C
CELL DIVISION PROTEIN KINASE 2 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 359 367 23
95 % 375 383 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 375 383 38
70 % 375 383 44
50 % 398 408 73
40 % 439 465 50
30 % 3802 4076 2
Entity #2 | Chains: B,D
CYCLIN A2 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 82 86 170
95 % 101 105 155 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 105 109 161
70 % 105 109 178
50 % 105 109 219
40 % 105 109 237
30 % 110 115 243
Entity #3 | Chains: E,F
RETINOBLASTOMA-LIKE PROTEIN 1 protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures