Sequence Similarity Clusters for the Entities in PDB 1H25

Entity #1 | Chains: A,C
CELL DIVISION PROTEIN KINASE 2 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 341 365 23
95 % 356 380 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 356 380 37
70 % 356 380 44
50 % 377 405 66
40 % 401 462 49
30 % 3330 3941 2
Entity #2 | Chains: B,D
CYCLIN A2 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 70 86 168
95 % 89 105 153 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 93 109 160
70 % 93 109 176
50 % 93 109 217
40 % 93 109 236
30 % 97 115 240
Entity #3 | Chains: E
RETINOBLASTOMA-ASSOCIATED PROTEIN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures