Sequence Similarity Clusters for the Entities in PDB 1H15

Entity #1 | Chains: A,D
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 67 71 232
95 % 74 78 296 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 89 94 235
70 % 89 94 270
50 % 137 146 175
40 % 137 146 191
30 % 285 304 99
Entity #2 | Chains: B,E
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA 1 CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 7062
95 % 4 4 7606 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 70 73 344
70 % 128 137 164
50 % 137 146 174
40 % 137 146 190
30 % 286 304 99
Entity #3 | Chains: C,F
DNA POLYMERASE protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.