Sequence Similarity Clusters for the Entities in PDB 1H15

Entity #1 | Chains: A,D
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 78 82 220
95 % 85 89 277 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 100 105 231
70 % 100 105 263
50 % 152 161 179
40 % 152 161 194
30 % 315 334 83
Entity #2 | Chains: B,E
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA 1 CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 7443
95 % 4 4 8007 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 81 84 318
70 % 143 152 159
50 % 152 161 178
40 % 152 161 193
30 % 316 334 83
Entity #3 | Chains: C,F
DNA POLYMERASE protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures