Sequence Similarity Clusters for the Entities in PDB 1H15

Entity #1 | Chains: A,D
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 70 74 232
95 % 77 81 297 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 92 97 238
70 % 92 97 272
50 % 140 149 180
40 % 140 149 196
30 % 291 310 98
Entity #2 | Chains: B,E
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA 1 CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 7283
95 % 4 4 7860 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 73 76 342
70 % 131 140 164
50 % 140 149 179
40 % 140 149 195
30 % 292 310 98
Entity #3 | Chains: C,F
DNA POLYMERASE protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.