Sequence Similarity Clusters for the Entities in PDB 1H0M

Entity #1 | Chains: A,B,C,D
TRANSCRIPTIONAL ACTIVATOR PROTEIN TRAR protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 8704
95 % 2 2 8939 Flexibility: High
Max RMSD: 17.6, Avg RMSD: 10.3
PDBFlex
90 % 2 2 8857
70 % 2 2 8477
50 % 2 2 7679
40 % 2 2 7061
30 % 2 2 6230
Entity #2 | Chains: E,F,G,H
5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.