Sequence Similarity Clusters for the Entities in PDB 1H0D

Entity #1 | Chains: A
ANTIBODY FAB FRAGMENT, LIGHT CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61686
95 % 3 22 599 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 21 103 153
70 % 733 2426 1
50 % 1503 4913 1
40 % 1503 4913 1
30 % 1685 5780 1
Entity #2 | Chains: B
ANTIBODY FAB FRAGMENT, HEAVY CHAIN protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60988
95 % 1 1 42853
90 % 1 1 40834
70 % 725 2376 2
50 % 1504 4913 1
40 % 1504 4913 1
30 % 1686 5780 1
Entity #3 | Chains: C
ANGIOGENIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 15 3556
95 % 27 44 1018 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.8
PDBFlex
90 % 28 46 990
70 % 33 52 862
50 % 34 54 879
40 % 298 367 89
30 % 513 750 21

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures