Sequence Similarity Clusters for the Entities in PDB 1H0D

Entity #1 | Chains: A
ANTIBODY FAB FRAGMENT, LIGHT CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60474
95 % 3 22 588 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 19 99 156
70 % 694 2329 1
50 % 1423 4717 1
40 % 1423 4717 1
30 % 1598 5571 1
Entity #2 | Chains: B
ANTIBODY FAB FRAGMENT, HEAVY CHAIN protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59793
95 % 1 1 42055
90 % 1 1 40113
70 % 686 2282 2
50 % 1424 4717 1
40 % 1424 4717 1
30 % 1599 5571 1
Entity #3 | Chains: C
ANGIOGENIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 15 3465
95 % 27 44 998 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.8
PDBFlex
90 % 28 46 969
70 % 33 52 846
50 % 34 54 863
40 % 290 359 87
30 % 505 742 22

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.