Sequence Similarity Clusters for the Entities in PDB 1GZS

Entity #1 | Chains: A,C
GTP-BINDING PROTEIN protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 23 1365
95 % 13 39 895 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 13 39 926
70 % 33 82 323
50 % 72 143 192
40 % 73 144 202
30 % 523 812 16
Entity #2 | Chains: B,D
SOPE protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43894
95 % 1 1 33180
90 % 1 1 31712
70 % 1 3 17473
50 % 1 3 15168
40 % 1 3 13497
30 % 1 3 11562

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures