Sequence Similarity Clusters for the Entities in PDB 1GZS

Entity #1 | Chains: A,C
GTP-BINDING PROTEIN protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 22 1379
95 % 13 37 896 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.5
PDBFlex
90 % 13 37 929
70 % 33 78 313
50 % 69 137 186
40 % 70 138 202
30 % 490 768 16
Entity #2 | Chains: B,D
SOPE protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42306
95 % 1 1 31996 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 30616
70 % 1 3 16821
50 % 1 3 14628
40 % 1 3 13026
30 % 1 3 11147

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.