Sequence Similarity Clusters for the Entities in PDB 1GZS

Entity #1 | Chains: A,C
GTP-BINDING PROTEIN protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 23 1409
95 % 13 39 912 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 13 39 944
70 % 33 82 333
50 % 72 143 197
40 % 73 144 205
30 % 531 822 16
Entity #2 | Chains: B,D
SOPE protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44807
95 % 1 1 33820
90 % 1 1 32300
70 % 1 3 17827
50 % 1 3 15455
40 % 1 3 13742
30 % 1 3 11756

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures