Sequence Similarity Clusters for the Entities in PDB 1GZS

Entity #1 | Chains: A,C
GTP-BINDING PROTEIN protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 22 1398
95 % 13 37 903 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 13 37 937
70 % 33 78 319
50 % 69 137 189
40 % 70 138 205
30 % 494 775 16
Entity #2 | Chains: B,D
SOPE protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42951
95 % 1 1 32492 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 31075
70 % 1 3 17107
50 % 1 3 14863
40 % 1 3 13235
30 % 1 3 11331

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.