Sequence Similarity Clusters for the Entities in PDB 1GZQ

Entity #1 | Chains: A
T-CELL SURFACE GLYCOPROTEIN CD1B protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 5894
95 % 7 11 5844 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 7 11 5868
70 % 8 15 3427
50 % 32 104 403
40 % 32 104 425
30 % 476 923 15
Entity #2 | Chains: B
B2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 370 634 2
95 % 398 678 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 401 687 4
70 % 494 940 4
50 % 504 962 3
40 % 504 962 7
30 % 504 962 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures