Sequence Similarity Clusters for the Entities in PDB 1GZP

Entity #1 | Chains: A
T-CELL SURFACE GLYCOPROTEIN CD1B protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 10182
95 % 5 7 8825 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 5 7 8757
70 % 7 9 4953
50 % 64 93 430
40 % 64 93 461
30 % 756 881 15
Entity #2 | Chains: B
B2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 542 607 2
95 % 582 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 591 660 4
70 % 782 898 4
50 % 796 920 3
40 % 796 920 8
30 % 796 920 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5L2J 1 A T-cell surface glycoprotein CD1b 9606
2 3T8X 1 A, C T-cell surface glycoprotein CD1b UNP residues 19-298 9606
3 2H26 1 A T-cell surface glycoprotein CD1b extracellular domain of CD1b antigen 9606
4 1GZQ 1 A T-CELL SURFACE GLYCOPROTEIN CD1B RESIDUES 18-295 9606
5 1GZP 1 A T-CELL SURFACE GLYCOPROTEIN CD1B RESIDUES 18-295 9606
6 5L2K 1 A T-cell surface glycoprotein CD1b 9606
7 1UQS 1 A T-CELL SURFACE GLYCOPROTEIN CD1B FRAGMENT: RESIDUES 18-295 9606