Sequence Similarity Clusters for the Entities in PDB 1GZP

Entity #1 | Chains: A
T-CELL SURFACE GLYCOPROTEIN CD1B protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 6440
95 % 9 11 5618 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 9 11 5651
70 % 12 15 3438
50 % 72 104 411
40 % 72 104 438
30 % 802 939 12
Entity #2 | Chains: B
B2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 600 675 1
95 % 613 690 1 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 622 699 3
70 % 824 953 3
50 % 838 975 2
40 % 838 975 5
30 % 838 975 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5WL1 1 A T-cell surface glycoprotein CD1b 9606
2 5L2J 1 A T-cell surface glycoprotein CD1b 9606
3 5WKE 1 A T-cell surface glycoprotein CD1b 9606
4 3T8X 1 A, C T-cell surface glycoprotein CD1b UNP residues 19-298 9606
5 2H26 1 A T-cell surface glycoprotein CD1b extracellular domain of CD1b antigen 9606
6 5WKG 1 A T-cell surface glycoprotein CD1b 9606
7 1GZQ 1 A T-CELL SURFACE GLYCOPROTEIN CD1B RESIDUES 18-295 9606
8 5WKI 1 A T-cell surface glycoprotein CD1b 9606
9 1GZP 1 A T-CELL SURFACE GLYCOPROTEIN CD1B RESIDUES 18-295 9606
10 5L2K 1 A T-cell surface glycoprotein CD1b 9606
11 1UQS 1 A T-CELL SURFACE GLYCOPROTEIN CD1B FRAGMENT: RESIDUES 18-295 9606