Sequence Similarity Clusters for the Entities in PDB 1GZP

Entity #1 | Chains: A
T-CELL SURFACE GLYCOPROTEIN CD1B protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 6382
95 % 9 11 5579 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 9 11 5610
70 % 12 15 3409
50 % 72 104 405
40 % 72 104 432
30 % 802 939 13
Entity #2 | Chains: B
B2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 600 675 2
95 % 613 690 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 622 699 4
70 % 824 953 4
50 % 838 975 3
40 % 838 975 6
30 % 838 975 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures