Sequence Similarity Clusters for the Entities in PDB 1GYY

Entity #1 | Chains: A,B
HYPOTHETICAL PROTEIN YDCE protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14350
95 % 2 3 13590 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 3 13375
70 % 2 3 12580
50 % 2 3 11221
40 % 2 3 10170
30 % 2 3 8867

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures