Sequence Similarity Clusters for the Entities in PDB 1GYX

Entity #1 | Chains: A,B
HYPOTHETICAL PROTEIN YDCE protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 12084
95 % 1 3 11626 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 3 11464
70 % 1 3 10826
50 % 1 3 9728
40 % 1 3 8803
30 % 1 3 7601

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures