Sequence Similarity Clusters for the Entities in PDB 1GYJ

Entity #1 | Chains: A,B
HYPOTHETICAL PROTEIN YDCE protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 12105
95 % 3 3 11646 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 3 11488
70 % 3 3 10845
50 % 3 3 9745
40 % 3 3 8819
30 % 3 3 7613

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures