Sequence Similarity Clusters for the Entities in PDB 1GYJ

Entity #1 | Chains: A,B
HYPOTHETICAL PROTEIN YDCE protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14463
95 % 3 3 13685 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 3 13463
70 % 3 3 12660
50 % 3 3 11287
40 % 3 3 10230
30 % 3 3 8914

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures