Sequence Similarity Clusters for the Entities in PDB 1GYD

Entity #1 | Chains: B
ARABINAN ENDO-1,5-ALPHA-L-ARABINOSIDASE A protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66329
95 % 2 3 10490 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 10342
70 % 2 3 9787
50 % 2 3 8828
40 % 9 11 3237
30 % 9 11 2995

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures