Sequence Similarity Clusters for the Entities in PDB 1GYD

Entity #1 | Chains: B
ARABINAN ENDO-1,5-ALPHA-L-ARABINOSIDASE A protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57428
95 % 2 3 9147 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 9066
70 % 2 3 8706
50 % 2 3 7923
40 % 9 10 4111
30 % 9 10 3799

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures