Sequence Similarity Clusters for the Entities in PDB 1GYB

Entity #1 | Chains: A,B,C,D
NUCLEAR TRANSPORT FACTOR 2 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9935
95 % 2 2 9734 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 2 9606
70 % 2 2 9163
50 % 3 3 6636
40 % 4 15 1642
30 % 7 25 1169
Entity #2 | Chains: E,F,G,H
NUCLEOPORIN protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures