Sequence Similarity Clusters for the Entities in PDB 1GYB

Entity #1 | Chains: A,B,C,D
NUCLEAR TRANSPORT FACTOR 2 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9676
95 % 2 2 9775 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 2 9662
70 % 2 2 9208
50 % 3 3 6528
40 % 4 15 1631
30 % 7 25 1108
Entity #2 | Chains: E,F,G,H
NUCLEOPORIN protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.