Sequence Similarity Clusters for the Entities in PDB 1GXS

Entity #1 | Chains: A,C
P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN A protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41648
95 % 1 1 35019 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 33465
70 % 1 1 29816
50 % 5 6 9073
40 % 5 6 8334
30 % 5 6 7212
Entity #2 | Chains: B,D
P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN B protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36283
95 % 1 1 30924 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 29637
70 % 1 1 26611
50 % 5 6 9212
40 % 5 6 8333
30 % 5 6 7211

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures