Sequence Similarity Clusters for the Entities in PDB 1GXS

Entity #1 | Chains: A,C
P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN A protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37650
95 % 1 1 29329 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 28312
70 % 1 1 25558
50 % 5 6 8841
40 % 5 6 8091
30 % 5 6 7139
Entity #2 | Chains: B,D
P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN B protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43600
95 % 1 1 32928 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 31490
70 % 1 1 28097
50 % 5 6 9024
40 % 5 6 8261
30 % 5 6 7282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.