Sequence Similarity Clusters for the Entities in PDB 1GXS

Entity #1 | Chains: A,C
P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN A protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38962
95 % 1 1 30301 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 29223
70 % 1 1 26333
50 % 5 6 9160
40 % 5 6 8380
30 % 5 6 7382
Entity #2 | Chains: B,D
P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN B protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45123
95 % 1 1 34013 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 32479
70 % 1 1 28932
50 % 5 6 9350
40 % 5 6 8553
30 % 5 6 7530

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures