Sequence Similarity Clusters for the Entities in PDB 1GXS

Entity #1 | Chains: A,C
P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN A protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38207
95 % 1 1 29757 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 28716
70 % 1 1 25897
50 % 5 6 8962
40 % 5 6 8200
30 % 5 6 7229
Entity #2 | Chains: B,D
P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN B protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44260
95 % 1 1 33409 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 31929
70 % 1 1 28464
50 % 5 6 9151
40 % 5 6 8374
30 % 5 6 7380

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures