Sequence Similarity Clusters for the Entities in PDB 1GXD

Entity #1 | Chains: A,B
72 KDA TYPE IV COLLAGENASE protein, length: 631 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25680
95 % 2 2 21823 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 2.4
PDBFlex
90 % 2 2 21191
70 % 2 2 19449
50 % 2 2 16900
40 % 2 2 15086
30 % 2 2 12944
Entity #2 | Chains: C,D
METALLOPROTEINASE INHIBITOR 2 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15827
95 % 3 3 14815 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 6 6 9496
70 % 6 6 9073
50 % 6 6 8212
40 % 8 8 5582
30 % 8 8 5003

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures