Sequence Similarity Clusters for the Entities in PDB 1GXD

Entity #1 | Chains: A,B
72 KDA TYPE IV COLLAGENASE protein, length: 631 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25161
95 % 2 2 21429 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 2.4
PDBFlex
90 % 2 2 20831
70 % 2 2 19126
50 % 2 2 16629
40 % 2 2 14855
30 % 2 2 12745
Entity #2 | Chains: C,D
METALLOPROTEINASE INHIBITOR 2 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15508
95 % 3 3 14558 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 6 6 9343
70 % 6 6 8930
50 % 6 6 8079
40 % 8 8 5491
30 % 8 8 4926

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.