Sequence Similarity Clusters for the Entities in PDB 1GVN

Entity #1 | Chains: A,C
EPSILON protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23546
95 % 1 2 20066 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 2 19506
70 % 1 2 17967
50 % 1 2 15621
40 % 1 2 13935
30 % 1 2 11924
Entity #2 | Chains: B,D
ZETA protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19127
95 % 1 2 16946 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 16598
70 % 1 2 15439
50 % 1 2 13521
40 % 1 2 12117
30 % 1 2 10412

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.