Sequence Similarity Clusters for the Entities in PDB 1GVN

Entity #1 | Chains: A,C
EPSILON protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18437
95 % 1 2 16903 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 2 16520
70 % 1 2 15368
50 % 1 2 13495
40 % 1 2 12085
30 % 1 2 10225
Entity #2 | Chains: B,D
ZETA protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18436
95 % 1 2 16902 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 16519
70 % 1 2 15367
50 % 1 2 13494
40 % 1 2 12084
30 % 1 2 10224

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures