Sequence Similarity Clusters for the Entities in PDB 1GVN

Entity #1 | Chains: A,C
EPSILON protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24254
95 % 1 2 20691 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 2 20112
70 % 1 2 18472
50 % 1 2 16031
40 % 1 2 14292
30 % 1 2 12232
Entity #2 | Chains: B,D
ZETA protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19720
95 % 1 2 17458 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 17111
70 % 1 2 15915
50 % 1 2 13912
40 % 1 2 12459
30 % 1 2 10714

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures