Sequence Similarity Clusters for the Entities in PDB 1GVN

Entity #1 | Chains: A,C
EPSILON protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23963
95 % 1 2 20458 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 2 19885
70 % 1 2 18263
50 % 1 2 15862
40 % 1 2 14148
30 % 1 2 12106
Entity #2 | Chains: B,D
ZETA protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 19473
95 % 1 2 17259
90 % 1 2 16907
70 % 1 2 15727
50 % 1 2 13760
40 % 1 2 12329
30 % 1 2 10598

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.