Sequence Similarity Clusters for the Entities in PDB 1GVM

Entity #1 | Chains: A,B,C,D,E,F
AUTOLYSIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 6927
95 % 3 3 7520 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 3 3 7481
70 % 3 3 7274
50 % 3 3 6712
40 % 3 3 6253
30 % 3 3 5602

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures