Sequence Similarity Clusters for the Entities in PDB 1GV4

Entity #1 | Chains: A,B
PROGRAMED CELL DEATH PROTEIN 8 protein, length: 528 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32823
95 % 10 17 1865 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.4
PDBFlex
90 % 10 17 1906
70 % 10 17 1924
50 % 10 17 1945
40 % 10 17 1941
30 % 10 17 1873

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures