Sequence Similarity Clusters for the Entities in PDB 1GUD

Entity #1 | Chains: A,B
D-ALLOSE-BINDING PERIPLASMIC PROTEIN protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 19704
95 % 1 3 17446 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.6
PDBFlex
90 % 1 3 17099
70 % 1 3 15903
50 % 1 3 13905
40 % 1 3 12453
30 % 33 62 564

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures