Sequence Similarity Clusters for the Entities in PDB 1GTR

Entity #1 | Chains: B
RNA (74-MER) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
GLUTAMINYL-tRNA SYNTHETASE protein, length: 553 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 14 3798
95 % 3 19 3243 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.7
PDBFlex
90 % 3 19 3289
70 % 3 19 3249
50 % 4 21 2724
40 % 4 21 2679
30 % 4 21 2516

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.