Sequence Similarity Clusters for the Entities in PDB 1GTR

Entity #1 | Chains: B
RNA (74-MER) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
GLUTAMINYL-tRNA SYNTHETASE protein, length: 553 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 14 3968
95 % 3 19 3381 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.7
PDBFlex
90 % 3 19 3433
70 % 3 19 3383
50 % 4 21 2828
40 % 4 21 2776
30 % 4 21 2607

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures