Sequence Similarity Clusters for the Entities in PDB 1GTN

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V
TRP RNA-BINDING ATTENUATION PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 22 39
95 % 20 23 54 Flexibility: No
Max RMSD: 3.4, Avg RMSD: 0.4
PDBFlex
90 % 20 23 58
70 % 24 29 45
50 % 24 29 83
40 % 24 29 100
30 % 24 29 112
Entity #2 | Chains: W
(GAGCC)11G 56-NUCLEOTIDE RNA rna, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures