Sequence Similarity Clusters for the Entities in PDB 1GT0

Entity #1 | Chains: A
5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3' dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3' dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
OCTAMER-BINDING TRANSCRIPTION FACTOR 1 protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28475
95 % 2 6 10142 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 2.8
PDBFlex
90 % 2 6 9996
70 % 2 6 9545
50 % 4 10 4079
40 % 5 11 2661
30 % 5 11 2465
Entity #4 | Chains: D
TRANSCRIPTION FACTOR SOX-2 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28188
95 % 1 3 24812
90 % 1 3 23960
70 % 1 3 21742
50 % 5 14 5175
40 % 5 15 4522
30 % 8 46 1229

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1GT0 4 D TRANSCRIPTION FACTOR SOX-2 HMG DOMAIN RESIDUES 41-120 10090
2 2LE4 1 A Transcription factor SOX-2 HMG box DNA binding residues 39-118 9606
3 1O4X 4 B Transcription factor SOX-2 9606