Sequence Similarity Clusters for the Entities in PDB 1GT0

Entity #1 | Chains: A
5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3' dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3' dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
OCTAMER-BINDING TRANSCRIPTION FACTOR 1 protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25481
95 % 2 6 9362 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 2.8
PDBFlex
90 % 2 6 9255
70 % 2 6 8853
50 % 4 10 3826
40 % 5 11 2474
30 % 5 11 2318
Entity #4 | Chains: D
TRANSCRIPTION FACTOR SOX-2 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 26150
95 % 1 3 23047
90 % 1 3 22313
70 % 1 3 20350
50 % 5 14 4818
40 % 5 15 4222
30 % 8 45 1158

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1GT0 4 D TRANSCRIPTION FACTOR SOX-2 HMG DOMAIN RESIDUES 41-120 10090
2 2LE4 1 A Transcription factor SOX-2 HMG box DNA binding residues 39-118 9606
3 1O4X 4 B Transcription factor SOX-2 9606