Sequence Similarity Clusters for the Entities in PDB 1GT0

Entity #1 | Chains: A
5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3' dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3' dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
OCTAMER-BINDING TRANSCRIPTION FACTOR 1 protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26531
95 % 2 6 9755 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 2.8
PDBFlex
90 % 2 6 9636
70 % 2 6 9234
50 % 4 10 3954
40 % 5 11 2572
30 % 5 11 2396
Entity #4 | Chains: D
TRANSCRIPTION FACTOR SOX-2 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27224
95 % 1 3 23990
90 % 1 3 23182
70 % 1 3 21046
50 % 5 14 5003
40 % 5 15 4394
30 % 8 46 1179

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1E3O 3 C OCTAMER-BINDING TRANSCRIPTION FACTOR 1 DNA-BINDING DOMAIN 9606
2 2XSD 3 C POU DOMAIN, CLASS 3, TRANSCRIPTION FACTOR 1 RESIDUES 240-402 10090
3 1AU7 3 A, B PROTEIN PIT-1 10116
4 3D1N 3 I, J, K, L, M, N, O, P POU domain, class 6, transcription factor 1 POU Domain (UNP residues 142-292) 9606
5 1GT0 3 C OCTAMER-BINDING TRANSCRIPTION FACTOR 1 POU DOMAIN RESIDUES 280-438 9606
6 1HF0 1 A, B OCTAMER-BINDING TRANSCRIPTION FACTOR 1 DNA-BINDING DOMAIN 9606
7 3L1P 1 A, B POU domain, class 5, transcription factor 1 UNP residues 131-282 10090
8 1OCT 3 C PROTEIN (OCT-1 POU DOMAIN) 9606
9 5WC9 1 A, B, E, F Pituitary-specific positive transcription factor 1 9606
10 1CQT 3 A, B POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1 OCT-1 POU DOMAIN, RESIDUES 278-439 9606
11 1O4X 3 A transcription factor Oct-1 9606