POP-OUT | CLOSE

An Information Portal to 107049 Biological Macromolecular Structures

Crystal structure of a POU/HMG/DNA ternary complex
Sequence Clustering and Redundancy Reduction Results
1GT0
Sequence Clusters for the Sequence Entities in PDB 1GT0
Entity #1: Chains: A - 5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3' dna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - 5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3' dna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - OCTAMER-BINDING TRANSCRIPTION FACTOR 1 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 22048
95% 2 6 7343
90% 2 6 7280
70% 2 6 7002
50% 4 9 3776
40% 5 10 2283
30% 5 10 2138
Entity #4: Chains: D - TRANSCRIPTION FACTOR SOX-2 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22897
95% 1 3 19102
90% 1 3 18535
70% 1 3 17051
50% 3 12 4392
40% 3 13 3658
30% 6 44 893
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.