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Crystal structure of a POU/HMG/DNA ternary complex
Sequence Clustering and Redundancy Reduction Results
1GT0
Sequence Clusters for the Sequence Entities in PDB 1GT0
Entity #1: Chains: A - 5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3' dna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - 5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3' dna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - OCTAMER-BINDING TRANSCRIPTION FACTOR 1 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 22246
95% 2 6 7412
90% 2 6 7349
70% 2 6 7068
50% 4 9 3816
40% 5 10 2308
30% 5 10 2166
Entity #4: Chains: D - TRANSCRIPTION FACTOR SOX-2 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23108
95% 1 3 19259
90% 1 3 18688
70% 1 3 17212
50% 3 12 4441
40% 3 13 3693
30% 6 44 904
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.