Sequence Similarity Clusters for the Entities in PDB 1GS9

Entity #1 | Chains: A
APOLIPOPROTEIN E protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26880
95 % 1 3 23707 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.4
PDBFlex
90 % 1 3 22926
70 % 1 3 20831
50 % 1 3 17928
40 % 1 3 15841
30 % 1 3 13270

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1GS9 1 A APOLIPOPROTEIN E RECEPTOR BINDING DOMAIN, RESIDUES 1-165 9606
2 1OR3 1 A PROTEIN (APOLIPOPROTEIN E) SELENOMETHIONINE MUTANT USED IN MAD PHASING EXPERIMENT RECEPTOR BINDING DOMAIN 9606
3 1OR2 1 A APOLIPOPROTEIN E SELENOMETHIONINE MUTANT USED IN MAD PHASING EXPERIMENT RECEPTOR BINDING DOMAIN, RESIDUES 1-165 9606