Sequence Similarity Clusters for the Entities in PDB 1GQQ

Entity #1 | Chains: A,B
UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 8069
95 % 4 4 8532 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 3.4
PDBFlex
90 % 4 4 8471
70 % 4 4 8148
50 % 6 6 5162
40 % 6 6 4880
30 % 7 7 4185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures