Sequence Similarity Clusters for the Entities in PDB 1GQB

Entity #1 | Chains: A,B
CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 10792
95 % 3 10 6078 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 10 6078
70 % 3 10 5925
50 % 3 13 4302
40 % 3 13 4107
30 % 3 15 3360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures