Sequence Similarity Clusters for the Entities in PDB 1GQB

Entity #1 | Chains: A,B
CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 11046
95 % 3 10 5775 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 10 5796
70 % 3 10 5667
50 % 3 13 4411
40 % 3 13 4093
30 % 3 15 3294

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures