Sequence Similarity Clusters for the Entities in PDB 1GPW

Entity #1 | Chains: A,C,E
HISF PROTEIN protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 26505
95 % 8 8 4321 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.3
PDBFlex
90 % 23 23 1149
70 % 23 23 1181
50 % 30 30 968
40 % 30 30 993
30 % 65 68 502
Entity #2 | Chains: B,D,F
AMIDOTRANSFERASE HISH protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 7113
95 % 4 5 5711 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 5 5713
70 % 4 5 5600
50 % 4 5 5268
40 % 4 5 4953
30 % 6 7 3641

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.