Sequence Similarity Clusters for the Entities in PDB 1GPW

Entity #1 | Chains: A,C,E
HISF PROTEIN protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27534
95 % 8 8 4467 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.4
PDBFlex
90 % 23 23 1188
70 % 23 23 1217
50 % 30 30 1000
40 % 30 30 1023
30 % 65 68 528
Entity #2 | Chains: B,D,F
AMIDOTRANSFERASE HISH protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 7383
95 % 4 5 5936 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 5 5944
70 % 4 5 5806
50 % 4 5 5459
40 % 4 5 5132
30 % 6 7 3766

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures