Sequence Similarity Clusters for the Entities in PDB 1GPW

Entity #1 | Chains: A,C,E
HISF PROTEIN protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6583
95 % 8 8 4693 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.4
PDBFlex
90 % 23 23 1235
70 % 23 23 1263
50 % 30 30 1021
40 % 30 32 998
30 % 65 70 546
Entity #2 | Chains: B,D,F
AMIDOTRANSFERASE HISH protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8260
95 % 4 5 6058 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 5 6058
70 % 4 5 5902
50 % 4 5 5539
40 % 4 5 5173
30 % 6 7 3720

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures