Sequence Similarity Clusters for the Entities in PDB 1GPQ

Entity #1 | Chains: A,B
INHIBITOR OF VERTEBRATE LYSOZYME protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43988
95 % 1 2 14401 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 1 2 14130
70 % 1 2 13251
50 % 1 2 11782
40 % 1 2 10682
30 % 1 2 9265
Entity #2 | Chains: C,D
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 206 646 3
95 % 212 699 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 216 716 5
70 % 236 933 7
50 % 236 941 7
40 % 238 975 11
30 % 238 975 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.