Sequence Similarity Clusters for the Entities in PDB 1GPQ

Entity #1 | Chains: A,B
INHIBITOR OF VERTEBRATE LYSOZYME protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30292
95 % 1 2 13929 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 1 2 13681
70 % 1 2 12829
50 % 1 2 11394
40 % 1 2 10241
30 % 1 2 8734
Entity #2 | Chains: C,D
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 212 707 3
95 % 216 719 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 220 736 5
70 % 242 956 7
50 % 242 964 8
40 % 244 998 10
30 % 244 998 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures