Sequence Similarity Clusters for the Entities in PDB 1GPQ

Entity #1 | Chains: A,B
INHIBITOR OF VERTEBRATE LYSOZYME protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44640
95 % 1 2 14640 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 1 2 14372
70 % 1 2 13493
50 % 1 2 11980
40 % 1 2 10866
30 % 1 2 9428
Entity #2 | Chains: C,D
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 208 655 3
95 % 214 708 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 218 725 5
70 % 238 942 7
50 % 238 950 8
40 % 240 984 11
30 % 240 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.