Sequence Similarity Clusters for the Entities in PDB 1GPQ

Entity #1 | Chains: A,B
INHIBITOR OF VERTEBRATE LYSOZYME protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32936
95 % 1 2 15248 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 1 2 14937
70 % 1 2 13917
50 % 1 2 12296
40 % 1 2 11023
30 % 1 2 9394
Entity #2 | Chains: C,D
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 762 3
95 % 241 769 4 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 245 786 5
70 % 269 1010 7
50 % 269 1019 8
40 % 271 1054 10
30 % 271 1054 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures