Sequence Similarity Clusters for the Entities in PDB 1GPO

Entity #1 | Chains: L,M
ANTIBODY M41 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39466
95 % 1 1 30200 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 13 33 1291
70 % 524 2264 1
50 % 1083 4587 1
40 % 1083 4587 1
30 % 1191 5394 1
Entity #2 | Chains: H,I
ANTIBODY M41 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39293
95 % 1 1 30091 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 4 12 3524
70 % 524 2222 2
50 % 1084 4587 1
40 % 1084 4587 1
30 % 1192 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.