Sequence Similarity Clusters for the Entities in PDB 1GPO

Entity #1 | Chains: L,M
ANTIBODY M41 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40046
95 % 1 1 30660 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 13 33 1303
70 % 528 2287 1
50 % 1091 4633 1
40 % 1091 4633 1
30 % 1205 5461 1
Entity #2 | Chains: H,I
ANTIBODY M41 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39873
95 % 1 1 30550
90 % 4 12 3563
70 % 528 2244 2
50 % 1092 4633 1
40 % 1092 4633 1
30 % 1206 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.