Sequence Similarity Clusters for the Entities in PDB 1GPO

Entity #1 | Chains: L,M
ANTIBODY M41 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40543
95 % 1 1 31033 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 13 37 1187
70 % 548 2362 1
50 % 1132 4781 1
40 % 1132 4781 1
30 % 1248 5635 1
Entity #2 | Chains: H,I
ANTIBODY M41 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40369
95 % 1 1 30923 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 4 12 3619
70 % 547 2311 2
50 % 1133 4781 1
40 % 1133 4781 1
30 % 1249 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures