Sequence Similarity Clusters for the Entities in PDB 1GPO

Entity #1 | Chains: L,M
ANTIBODY M41 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42279
95 % 1 1 35486 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 14 39 1088
70 % 597 2519 1
50 % 1231 5107 1
40 % 1449 5756 1
30 % 1767 7175 1
Entity #2 | Chains: H,I
ANTIBODY M41 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42280
95 % 1 1 35487 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 5 14 2776
70 % 597 2478 2
50 % 1232 5107 1
40 % 1450 5756 1
30 % 1768 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures