Sequence Similarity Clusters for the Entities in PDB 1GPD

Entity #1 | Chains: G,R
D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12010
95 % 7 7 3070 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 7 7 3120
70 % 29 29 482
50 % 139 139 70
40 % 139 139 89
30 % 139 139 101

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.