Sequence Similarity Clusters for the Entities in PDB 1GP2

Entity #1 | Chains: A
G PROTEIN GI ALPHA 1 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 8033
95 % 23 45 724 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 1.6
PDBFlex
90 % 24 51 557
70 % 32 66 393
50 % 32 77 410
40 % 34 97 343
30 % 35 99 335
Entity #2 | Chains: B
G PROTEIN GI BETA 1 protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 30 1135
95 % 9 35 1322 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 9 35 1346
70 % 9 35 1362
50 % 10 36 1338
40 % 10 38 1284
30 % 10 38 1266
Entity #3 | Chains: G
G PROTEIN GI GAMMA 2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 25 1680
95 % 3 25 2211 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 3 25 2278
70 % 3 25 2275
50 % 3 25 2250
40 % 3 25 2237
30 % 3 25 2143

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.