Sequence Similarity Clusters for the Entities in PDB 1GP2

Entity #1 | Chains: A
G PROTEIN GI ALPHA 1 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 11 6063
95 % 23 48 737 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 1.7
PDBFlex
90 % 24 54 576
70 % 32 70 410
50 % 35 106 364
40 % 36 108 377
30 % 36 108 377
Entity #2 | Chains: B
G PROTEIN GI BETA 1 protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 44 950
95 % 10 47 1027 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 10 47 1060
70 % 10 47 1103
50 % 11 48 1110
40 % 11 48 1122
30 % 11 48 1113
Entity #3 | Chains: G
G PROTEIN GI GAMMA 2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 36 1282
95 % 3 36 1521 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 3 36 1545
70 % 3 36 1561
50 % 3 36 1607
40 % 3 36 1596
30 % 3 36 1582

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures