Sequence Similarity Clusters for the Entities in PDB 1GOT

Entity #1 | Chains: A
GT-ALPHA/GI-ALPHA CHIMERA protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14412
95 % 1 4 8470 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.8
PDBFlex
90 % 3 7 4284
70 % 14 66 393
50 % 14 77 413
40 % 14 97 347
30 % 14 99 339
Entity #2 | Chains: B
GT-BETA protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 14440
95 % 2 35 1330
90 % 2 35 1355
70 % 2 35 1371
50 % 3 36 1351
40 % 3 38 1300
30 % 3 38 1278
Entity #3 | Chains: G
GT-GAMMA protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70229
95 % 1 1 48676
90 % 1 1 46223
70 % 1 1 40696
50 % 1 1 34799
40 % 1 1 30675
30 % 1 1 25880

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.