Sequence Similarity Clusters for the Entities in PDB 1GOT

Entity #1 | Chains: A
GT-ALPHA/GI-ALPHA CHIMERA protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 14640
95 % 1 4 8593
90 % 3 7 4345
70 % 14 66 398
50 % 14 77 418
40 % 14 97 355
30 % 14 99 345
Entity #2 | Chains: B
GT-BETA protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 14669
95 % 2 35 1345 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 2 35 1371
70 % 2 35 1388
50 % 3 36 1364
40 % 3 38 1314
30 % 3 38 1293
Entity #3 | Chains: G
GT-GAMMA protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71348
95 % 1 1 49515
90 % 1 1 47004
70 % 1 1 41267
50 % 1 1 35202
40 % 1 1 31016
30 % 1 1 26168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.