Sequence Similarity Clusters for the Entities in PDB 1GOT

Entity #1 | Chains: A
GT-ALPHA/GI-ALPHA CHIMERA protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14824
95 % 1 4 8702 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 3 7 4408
70 % 14 66 402
50 % 14 77 423
40 % 14 97 362
30 % 14 99 352
Entity #2 | Chains: B
GT-BETA protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 14852
95 % 2 35 1359 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 2 35 1387
70 % 2 35 1406
50 % 3 36 1381
40 % 3 38 1329
30 % 3 38 1305
Entity #3 | Chains: G
GT-GAMMA protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72138
95 % 1 1 50037
90 % 1 1 47468
70 % 1 1 41632
50 % 1 1 35513
40 % 1 1 31285
30 % 1 1 26402

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.