Sequence Similarity Clusters for the Entities in PDB 1GOT

Entity #1 | Chains: A
GT-ALPHA/GI-ALPHA CHIMERA protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16979
95 % 1 4 10271 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.8
PDBFlex
90 % 3 7 4634
70 % 14 70 410
50 % 15 106 364
40 % 15 108 377
30 % 15 108 377
Entity #2 | Chains: B
GT-BETA protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 44 950
95 % 2 47 1027 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 2 47 1060
70 % 2 47 1103
50 % 3 48 1110
40 % 3 48 1122
30 % 3 48 1113
Entity #3 | Chains: G
GT-GAMMA protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50473
95 % 1 1 41730
90 % 1 1 42798
70 % 1 1 37702
50 % 1 1 31997
40 % 1 1 28010
30 % 1 1 23386

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures