Sequence Similarity Clusters for the Entities in PDB 1GOT

Entity #1 | Chains: A
GT-ALPHA/GI-ALPHA CHIMERA protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 17423
95 % 1 4 10499 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.8
PDBFlex
90 % 3 7 4766
70 % 14 70 428
50 % 15 107 374
40 % 15 109 383
30 % 15 109 386
Entity #2 | Chains: B
GT-BETA protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 45 937
95 % 2 48 1033 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 2 48 1063
70 % 2 48 1108
50 % 3 49 1123
40 % 3 49 1131
30 % 3 49 1112
Entity #3 | Chains: G
GT-GAMMA protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51426
95 % 1 1 42452
90 % 1 1 43450
70 % 1 1 38253
50 % 1 1 32456
40 % 1 1 28393
30 % 1 1 23722

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures