Sequence Similarity Clusters for the Entities in PDB 1GO4

Entity #1 | Chains: A,B,C,D
MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16039
95 % 2 11 1332 Flexibility: Medium
Max RMSD: 12.8, Avg RMSD: 4.9
PDBFlex
90 % 2 11 1355
70 % 2 11 1374
50 % 2 11 1427
40 % 2 12 1356
30 % 2 12 1331
Entity #2 | Chains: E,F,G,H
MAD1 (MITOTIC ARREST DEFICIENT)-LIKE 1 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24852
95 % 1 1 21172 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 6.2
PDBFlex
90 % 1 1 20560
70 % 1 1 18865
50 % 1 1 16354
40 % 1 1 14563
30 % 1 1 12459

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures