Sequence Similarity Clusters for the Entities in PDB 1GO4

Entity #1 | Chains: A,B,C,D
MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15791
95 % 2 11 1321 Flexibility: Medium
Max RMSD: 12.8, Avg RMSD: 4.9
PDBFlex
90 % 2 11 1346
70 % 2 11 1366
50 % 2 11 1415
40 % 2 12 1343
30 % 2 12 1317
Entity #2 | Chains: E,F,G,H
MAD1 (MITOTIC ARREST DEFICIENT)-LIKE 1 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24514
95 % 1 1 20901 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 6.2
PDBFlex
90 % 1 1 20306
70 % 1 1 18643
50 % 1 1 16172
40 % 1 1 14408
30 % 1 1 12329

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures