Sequence Similarity Clusters for the Entities in PDB 1GO4

Entity #1 | Chains: A,B,C,D
MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15420
95 % 2 11 1289 Flexibility: Medium
Max RMSD: 12.8, Avg RMSD: 4.9
PDBFlex
90 % 2 11 1316
70 % 2 11 1339
50 % 2 11 1385
40 % 2 12 1313
30 % 2 12 1286
Entity #2 | Chains: E,F,G,H
MAD1 (MITOTIC ARREST DEFICIENT)-LIKE 1 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23954
95 % 1 1 20470 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 6.2
PDBFlex
90 % 1 1 19904
70 % 1 1 18263
50 % 1 1 15864
40 % 1 1 14145
30 % 1 1 12106

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.