Sequence Similarity Clusters for the Entities in PDB 1GO4

Entity #1 | Chains: A,B,C,D
MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14925
95 % 2 11 1255 Flexibility: Medium
Max RMSD: 12.8, Avg RMSD: 4.7
PDBFlex
90 % 2 11 1282
70 % 2 11 1302
50 % 2 11 1345
40 % 2 12 1271
30 % 2 12 1251
Entity #2 | Chains: E,F,G,H
MAD1 (MITOTIC ARREST DEFICIENT)-LIKE 1 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23187
95 % 1 1 19802 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 6.2
PDBFlex
90 % 1 1 19253
70 % 1 1 17738
50 % 1 1 15432
40 % 1 1 13761
30 % 1 1 11779

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.