Sequence Similarity Clusters for the Entities in PDB 1GO4

Entity #1 | Chains: A,B,C,D
Mitotic spindle assembly checkpoint protein MAD2A protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 2382
95 % 2 12 1340 Flexibility: Medium
Max RMSD: 12.8, Avg RMSD: 5.1
PDBFlex
90 % 2 12 1364
70 % 2 12 1383
50 % 2 12 1423
40 % 2 13 1323
30 % 2 13 1314
Entity #2 | Chains: E,F,G,H
Mitotic spindle assembly checkpoint protein MAD1 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19796
95 % 1 1 17988 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 6.2
PDBFlex
90 % 1 1 17538
70 % 1 1 16225
50 % 1 1 14198
40 % 1 1 12667
30 % 1 1 10666

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures