Sequence Similarity Clusters for the Entities in PDB 1GO3

Entity #1 | Chains: E,M
DNA-DIRECTED RNA POLYMERASE SUBUNIT E protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42238
95 % 1 1 32024 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 30635
70 % 1 1 27365
50 % 1 3 11886
40 % 1 10 3529
30 % 1 10 3299
Entity #2 | Chains: F,N
DNA-DIRECTED RNA POLYMERASE SUBUNIT F protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46629
95 % 1 1 34883 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 33335
70 % 1 1 29667
50 % 1 1 25321
40 % 1 3 11003
30 % 1 10 3334

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.