Sequence Similarity Clusters for the Entities in PDB 1GO3

Entity #1 | Chains: E,M
DNA-DIRECTED RNA POLYMERASE SUBUNIT E protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39887
95 % 1 1 30740 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 29486
70 % 1 1 26452
50 % 1 10 3778
40 % 1 10 3512
30 % 1 10 3235
Entity #2 | Chains: F,N
DNA-DIRECTED RNA POLYMERASE SUBUNIT F protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36077
95 % 1 1 30741 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29487
70 % 1 1 26453
50 % 1 1 22693
40 % 1 3 10671
30 % 1 10 3244

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures