Sequence Similarity Clusters for the Entities in PDB 1GO3

Entity #1 | Chains: E,M
DNA-DIRECTED RNA POLYMERASE SUBUNIT E protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43718
95 % 1 1 33082 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 31602
70 % 1 1 28179
50 % 1 3 12286
40 % 1 10 3654
30 % 1 10 3414
Entity #2 | Chains: F,N
DNA-DIRECTED RNA POLYMERASE SUBUNIT F protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48210
95 % 1 1 36009 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 34362
70 % 1 1 30534
50 % 1 1 26024
40 % 1 3 11359
30 % 1 10 3445

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures