Sequence Similarity Clusters for the Entities in PDB 1GMY

Entity #1 | Chains: A,B,C
CATHEPSIN B protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6264
95 % 4 8 5188 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.0
PDBFlex
90 % 4 8 5217
70 % 4 21 2083
50 % 7 25 1686
40 % 7 25 1676
30 % 99 282 118

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures