Sequence Similarity Clusters for the Entities in PDB 1GMY

Entity #1 | Chains: A,B,C
CATHEPSIN B protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 10420
95 % 2 5 7752 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.0
PDBFlex
90 % 2 5 7700
70 % 2 18 2402
50 % 5 22 1894
40 % 5 22 1899
30 % 92 248 125

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures