Sequence Similarity Clusters for the Entities in PDB 1GMH

Entity #1 | Chains: E
GAMMA-CHYMOTRYPSIN A protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
GAMMA-CHYMOTRYPSIN A protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 38 819
95 % 25 38 1121 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 25 38 1145
70 % 25 40 1139
50 % 25 40 1179
40 % 26 42 1145
30 % 27 50 981
Entity #3 | Chains: G
GAMMA-CHYMOTRYPSIN A protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 38 820
95 % 25 38 1122 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 25 38 1147
70 % 25 40 1142
50 % 27 43 1112
40 % 28 52 978
30 % 28 52 951

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YPH 3 E, F CHYMOTRYPSIN A, chain C 9913 3.4.21.1 | Details
2 1GG6 3 C GAMMA CHYMOTRYPSIN 9913 3.4.21.1 | Details
3 1GGD 3 C GAMMA CHYMOTRYPSIN 9913 3.4.21.1 | Details
4 2P8O 3 C Chymotrypsin A chain C 9913 3.4.21.1 | Details
5 1GCT 3 C GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
6 3GCT 3 G GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
7 3RU4 5 E Chymotrypsinogen A 9913 3.4.21.1 | Details
8 1AB9 3 C GAMMA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
9 3VGC 3 C GAMMA CHYMOTRYPSIN A-CHYMOTRYPSIN PURCHASED FROM SIGMA AND CONVERTED TO G-CHYMOTRYPSIN BY THE METHOD OF STODDARD ET AL., 1990, BIOCHEMISTRY, VOL. 29, P. 4871-4879 9913 3.4.21.1 | Details
10 1CHO 3 G ALPHA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
11 2GCT 3 C GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
12 3PO1 3 C Thrombin heavy chain 9606 3.4.21.5 | Details
13 1AFQ 3 C BOVINE GAMMA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
14 1EPT 3 C PORCINE E-TRYPSIN 9823 3.4.21.4 | Details
15 2GMT 3 C GAMMA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
16 7GCH 3 G GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
17 1AKS 2 B ALPHA TRYPSIN 9823 3.4.21.4 | Details
18 6CHA 3 C, G ALPHA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
19 1GHB 3 G GAMMA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
20 2GCH 3 G GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
21 2VGC 3 C GAMMA CHYMOTRYPSIN A-CHYMOTRYPSIN PURCHASED FROM SIGMA AND CONVERTED TO G-CHYMOTRYPSIN BY THE METHOD OF STODDARD ET AL., 1990, BIOCHEMISTRY, VOL. 29, P. 4871-4879 9913 3.4.21.1 | Details
22 1VGC 3 C GAMMA CHYMOTRYPSIN A-CHYMOTRYPSIN PURCHASED FROM SIGMA AND CONVERTED TO G-CHYMOTRYPSIN BY THE METHOD OF STODDARD ET AL., 1990, BIOCHEMISTRY, VOL. 29, P. 4871-4879 9913 3.4.21.1 | Details
23 3GCH 3 C GAMMA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
24 4GCH 3 G GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
25 6GCH 3 G GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
26 1N8O 3 C Chymotrypsin A, C chain 9913 3.4.21.1 | Details
27 1GHA 3 G GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
28 1GMH 3 G GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
29 1UCY 3 E THROMBIN CHYMOTRYPSINOGEN NUMBERING (RATHER THAN SEQUENTIAL) SYSTEM IS USED, BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE STRUCTURE OF CHYMOTRYPSINOGEN (H.BRANDSTETTER ET AL., 1992, J.MOL.BIOL., V. 226, 1085). THE N-TERMINUS OF THE FIBRINOPEPTIDE IS ACETYLATED. FIBRINOPEPTIDE SEQUENCE NUMBERS ARE ACE 6 TO ARG 19. A NEW RESIDUE, OPR, HAS BEEN DEFINED FOR THE ARG/GLY COMBINATION IN WHICH THE AMIDE NITROGEN HAS BEEN REPLACED WITH A CH2, MAKING THE NORMAL AMIDE BOND BETWEEN THESE TWO RESIDUES A KETONE BOND. THE FIBRINOPEPTIDE NUMBERING IS CONSEQUENTLY INCREMENTED BY 1 AFTER THIS RESIDUE IN KEEPING WITH THE FIBRINOGEN NUMBERING SCHEME. THERE ARE ALTERNATE CONFORMATIONS FOR RESIDUES PRO 18 AND ARG 19 IN FIBRINOPEPTIDE III. 9913 3.4.21.5 | Details
30 4VGC 3 C GAMMA CHYMOTRYPSIN A-CHYMOTRYPSIN PURCHASED FROM SIGMA AND CONVERTED TO G-CHYMOTRYPSIN BY THE METHOD OF STODDARD ET AL., 1990, BIOCHEMISTRY, VOL. 29, P. 4871-4879 9913 3.4.21.1 | Details
31 1GMC 3 G GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
32 1GMD 3 G GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
33 1RIW 3 C thrombin heavy chain, C residues 185-286 9606 3.4.21.5 | Details
34 1UHB 2 B Trypsin 9823 3.4.21.4 | Details
35 1BBR 3 E EPSILON-THROMBIN 9913 3.4.21.5 | Details
36 1CA0 3 C, H BOVINE CHYMOTRYPSIN 9913 3.4.21.1 | Details
37 1BHX 3 F ALPHA THROMBIN 9606 3.4.21.5 | Details
38 2HNT 4 F GAMMA-THROMBIN 9606 3.4.21.5 | Details
39 1HJA 3 C ALPHA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
40 1YCP 5 M EPSILON THROMBIN 9913 3.4.21.5 | Details
41 2PKS 3 C Thrombin heavy chain fragment Residues 518-619 9606 3.4.21.5 | Details
42 5GCH 3 G GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
43 3BG4 3 C Chymotrypsin A chain C 9913 3.4.21.1 | Details
44 1CBW 3 C, H BOVINE CHYMOTRYPSIN 9913 3.4.21.1 | Details
45 2JET 3 C CHYMOTRYPSINOGEN B CHAIN C RESIDUES 165-263 10116 3.4.21.1 | Details
46 1KDQ 2 B CHYMOTRYPSIN B, C CHAIN 10116 3.4.21.1 | Details
47 1VIT 5 G EPSILON THROMBIN 9913 3.4.21.5 | Details
48 1MTN 3 C, G ALPHA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
49 8GCH 3 G GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
50 5CHA 3 C, G ALPHA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
51 4CHA 3 C, G ALPHA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
52 2CHA 3 C, G ALPHA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details