Sequence Similarity Clusters for the Entities in PDB 1GMH

Entity #1 | Chains: E
GAMMA-CHYMOTRYPSIN A protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
GAMMA-CHYMOTRYPSIN A protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 38 1006
95 % 25 38 1223 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 25 38 1246
70 % 25 40 1228
50 % 25 40 1266
40 % 30 46 1152
30 % 31 54 987
Entity #3 | Chains: G
GAMMA-CHYMOTRYPSIN A protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 38 1028
95 % 25 38 1242 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 25 38 1262
70 % 25 40 1237
50 % 31 47 1115
40 % 32 56 957
30 % 32 56 951

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures