Sequence Similarity Clusters for the Entities in PDB 1GMD

Entity #1 | Chains: E
GAMMA-CHYMOTRYPSIN A protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
GAMMA-CHYMOTRYPSIN A protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 38 819
95 % 28 38 1121 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 28 38 1145
70 % 28 40 1139
50 % 28 40 1179
40 % 29 42 1145
30 % 31 50 981
Entity #3 | Chains: G
GAMMA-CHYMOTRYPSIN A protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 38 820
95 % 28 38 1122 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 28 38 1147
70 % 28 40 1142
50 % 30 43 1112
40 % 32 52 978
30 % 32 52 951
Entity #4 | Chains: B
PRO GLY ALA TYR ASP PEPTIDE protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.