Sequence Similarity Clusters for the Entities in PDB 1GMD

Entity #1 | Chains: E
GAMMA-CHYMOTRYPSIN A protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
GAMMA-CHYMOTRYPSIN A protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 38 970
95 % 28 38 1178 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 28 38 1200
70 % 28 40 1195
50 % 28 40 1244
40 % 32 45 1144
30 % 34 53 982
Entity #3 | Chains: G
GAMMA-CHYMOTRYPSIN A protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 38 990
95 % 28 38 1194 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 28 38 1216
70 % 28 40 1204
50 % 33 46 1121
40 % 35 55 953
30 % 35 55 951
Entity #4 | Chains: B
PRO GLY ALA TYR ASP PEPTIDE protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures