Sequence Similarity Clusters for the Entities in PDB 1GMD

Entity #1 | Chains: E
GAMMA-CHYMOTRYPSIN A protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
GAMMA-CHYMOTRYPSIN A protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 38 783
95 % 28 38 1076
90 % 28 38 1098
70 % 28 40 1092
50 % 28 40 1132
40 % 29 42 1101
30 % 31 50 940
Entity #3 | Chains: G
GAMMA-CHYMOTRYPSIN A protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 38 785
95 % 28 38 1079
90 % 28 38 1101
70 % 28 40 1096
50 % 30 43 1061
40 % 32 52 938
30 % 32 52 914
Entity #4 | Chains: B
PRO GLY ALA TYR ASP PEPTIDE protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.